Installation output for atlas-lapack [ok]
Installation time: 3m2s
/home/mario/local/chicken-4.8.0.3/bin/chicken-install -prefix /home/mario/salmonella/4.8.0.3/1/repo
retrieving ...
checking platform for `atlas-lapack' ...
checking dependencies for `atlas-lapack' ...
missing: bind, blas
retrieving ...
connecting to host "chicken.kitten-technologies.co.uk", port 80 ...
requesting "/henrietta.cgi?name=bind&mode=default" ...
reading response ...
HTTP/1.1 200 OK
Date: Thu, 28 Feb 2013 11:36:55 GMT
Server: Apache/2.2.19 (Unix) mod_ssl/2.2.19 OpenSSL/0.9.9-dev DAV/2 SVN/1.6.17 PHP/5.2.17 mod_fastcgi/2.4.6
Connection: close
Transfer-Encoding: chunked
Content-Type: text/plain
reading chunks ....
reading files ...
./bind-translator.scm
./bind.meta
./bind.scm
./bind.setup
./c.l
./chicken-bind.scm
./cplusplus-object.scm
./runsilex.scm
bind located at /tmp/temp6abf.24859/bind
connecting to host "chicken.kitten-technologies.co.uk", port 80 ...
requesting "/henrietta.cgi?name=blas&mode=default" ...
reading response ...
HTTP/1.1 200 OK
Date: Thu, 28 Feb 2013 11:36:55 GMT
Server: Apache/2.2.19 (Unix) mod_ssl/2.2.19 OpenSSL/0.9.9-dev DAV/2 SVN/1.6.17 PHP/5.2.17 mod_fastcgi/2.4.6
Connection: close
Transfer-Encoding: chunked
Content-Type: text/plain
reading chunks ....
reading files ...
./blas.meta
./blas.scm
./blas.setup
blas located at /tmp/temp6abf.24859/blas
checking platform for `blas' ...
checking dependencies for `blas' ...
missing: bind
retrieving ...
checking platform for `bind' ...
checking dependencies for `bind' ...
missing: silex, coops, regex, make
retrieving ...
connecting to host "chicken.kitten-technologies.co.uk", port 80 ...
requesting "/henrietta.cgi?name=silex&mode=default" ...
reading response ...
HTTP/1.1 200 OK
Date: Thu, 28 Feb 2013 11:36:55 GMT
Server: Apache/2.2.19 (Unix) mod_ssl/2.2.19 OpenSSL/0.9.9-dev DAV/2 SVN/1.6.17 PHP/5.2.17 mod_fastcgi/2.4.6
Connection: close
Transfer-Encoding: chunked
Content-Type: text/plain
reading chunks ....
reading files ...
./silex.meta
./silex.scm
./silex.setup
silex located at /tmp/temp6abf.24859/silex
connecting to host "chicken.kitten-technologies.co.uk", port 80 ...
requesting "/henrietta.cgi?name=coops&mode=default" ...
reading response ...
HTTP/1.1 200 OK
Date: Thu, 28 Feb 2013 11:36:55 GMT
Server: Apache/2.2.19 (Unix) mod_ssl/2.2.19 OpenSSL/0.9.9-dev DAV/2 SVN/1.6.17 PHP/5.2.17 mod_fastcgi/2.4.6
Connection: close
Transfer-Encoding: chunked
Content-Type: text/plain
reading chunks ..
reading files ...
./coops-module.scm
./coops-primitive-objects.scm
./coops.meta
./coops.scm
./coops.setup
coops located at /tmp/temp6abf.24859/coops
connecting to host "chicken.kitten-technologies.co.uk", port 80 ...
requesting "/henrietta.cgi?name=regex&mode=default" ...
reading response ...
HTTP/1.1 200 OK
Date: Thu, 28 Feb 2013 11:36:55 GMT
Server: Apache/2.2.19 (Unix) mod_ssl/2.2.19 OpenSSL/0.9.9-dev DAV/2 SVN/1.6.17 PHP/5.2.17 mod_fastcgi/2.4.6
Connection: close
Transfer-Encoding: chunked
Content-Type: text/plain
reading chunks ..
reading files ...
./regex.meta
./regex.scm
./regex.setup
./regex.wiki
regex located at /tmp/temp6abf.24859/regex
connecting to host "chicken.kitten-technologies.co.uk", port 80 ...
requesting "/henrietta.cgi?name=make&mode=default" ...
reading response ...
HTTP/1.1 200 OK
Date: Thu, 28 Feb 2013 11:36:55 GMT
Server: Apache/2.2.19 (Unix) mod_ssl/2.2.19 OpenSSL/0.9.9-dev DAV/2 SVN/1.6.17 PHP/5.2.17 mod_fastcgi/2.4.6
Connection: close
Transfer-Encoding: chunked
Content-Type: text/plain
reading chunks .
reading files ...
./make.meta
./make.scm
./make.setup
make located at /tmp/temp6abf.24859/make
checking platform for `make' ...
checking dependencies for `make' ...
checking platform for `regex' ...
checking dependencies for `regex' ...
checking platform for `coops' ...
checking dependencies for `coops' ...
missing: record-variants
retrieving ...
connecting to host "chicken.kitten-technologies.co.uk", port 80 ...
requesting "/henrietta.cgi?name=record-variants&mode=default" ...
reading response ...
HTTP/1.1 200 OK
Date: Thu, 28 Feb 2013 11:36:55 GMT
Server: Apache/2.2.19 (Unix) mod_ssl/2.2.19 OpenSSL/0.9.9-dev DAV/2 SVN/1.6.17 PHP/5.2.17 mod_fastcgi/2.4.6
Connection: close
Transfer-Encoding: chunked
Content-Type: text/plain
reading chunks .
reading files ...
./record-variants.meta
./record-variants.scm
./record-variants.setup
record-variants located at /tmp/temp6abf.24859/record-variants
checking platform for `record-variants' ...
checking dependencies for `record-variants' ...
checking platform for `silex' ...
checking dependencies for `silex' ...
install order:
("silex" "record-variants" "coops" "regex" "make" "bind" "blas" "atlas-lapack")
installing silex:1.4 ...
changing current directory to /tmp/temp6abf.24859/silex
/home/mario/local/chicken-4.8.0.3/bin/csi -bnq -setup-mode -e "(require-library setup-api)" -e "(import setup-api)" -e "(setup-error-handling)" -e "(extension-name-and-version '(\"silex\" \"1.4\"))" -e "(destination-prefix \"/home/mario/salmonella/4.8.0.3/1/repo\")" -e "(runtime-prefix \"/home/mario/salmonella/4.8.0.3/1/repo\")" /tmp/temp6abf.24859/silex/silex.setup
/home/mario/local/chicken-4.8.0.3/bin/csc -feature compiling-extension -setup-mode -s -O2 -d1 silex.scm -j silex
/home/mario/local/chicken-4.8.0.3/bin/csc -feature compiling-extension -setup-mode -s -O2 -d1 silex.import.scm
cp -r silex.so /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/silex.so
chmod a+r /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/silex.so
cp -r silex.import.so /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/silex.import.so
chmod a+r /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/silex.import.so
chmod a+r /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/silex.setup-info
installing record-variants:0.5 ...
changing current directory to /tmp/temp6abf.24859/record-variants
/home/mario/local/chicken-4.8.0.3/bin/csi -bnq -setup-mode -e "(require-library setup-api)" -e "(import setup-api)" -e "(setup-error-handling)" -e "(extension-name-and-version '(\"record-variants\" \"0.5\"))" -e "(destination-prefix \"/home/mario/salmonella/4.8.0.3/1/repo\")" -e "(runtime-prefix \"/home/mario/salmonella/4.8.0.3/1/repo\")" /tmp/temp6abf.24859/record-variants/record-variants.setup
/home/mario/local/chicken-4.8.0.3/bin/csc -feature compiling-extension -setup-mode -host -s -O2 -d0 record-variants.scm -j record-variants
/home/mario/local/chicken-4.8.0.3/bin/csc -feature compiling-extension -setup-mode -host -s -O2 -d0 record-variants.import.scm
cp -r record-variants.so /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/record-variants.so
chmod a+r /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/record-variants.so
cp -r record-variants.import.so /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/record-variants.import.so
chmod a+r /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/record-variants.import.so
chmod a+r /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/record-variants.setup-info
installing coops:1.92 ...
changing current directory to /tmp/temp6abf.24859/coops
/home/mario/local/chicken-4.8.0.3/bin/csi -bnq -setup-mode -e "(require-library setup-api)" -e "(import setup-api)" -e "(setup-error-handling)" -e "(extension-name-and-version '(\"coops\" \"1.92\"))" -e "(destination-prefix \"/home/mario/salmonella/4.8.0.3/1/repo\")" -e "(runtime-prefix \"/home/mario/salmonella/4.8.0.3/1/repo\")" /tmp/temp6abf.24859/coops/coops.setup
/home/mario/local/chicken-4.8.0.3/bin/csc -feature compiling-extension -setup-mode -s -O3 -d1 coops-module.scm -JS -o coops.so
/home/mario/local/chicken-4.8.0.3/bin/csc -feature compiling-extension -setup-mode -s -O3 -d0 coops.import.scm
/home/mario/local/chicken-4.8.0.3/bin/csc -feature compiling-extension -setup-mode -s -O3 -d1 coops-primitive-objects -JS
/home/mario/local/chicken-4.8.0.3/bin/csc -feature compiling-extension -setup-mode -s -O3 -d0 coops-primitive-objects.import.scm
cp -r coops.so /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/coops.so
chmod a+r /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/coops.so
cp -r coops.import.so /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/coops.import.so
chmod a+r /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/coops.import.so
cp -r coops-primitive-objects.so /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/coops-primitive-objects.so
chmod a+r /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/coops-primitive-objects.so
cp -r coops-primitive-objects.import.so /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/coops-primitive-objects.import.so
chmod a+r /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/coops-primitive-objects.import.so
chmod a+r /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/coops.setup-info
installing regex:1.0 ...
changing current directory to /tmp/temp6abf.24859/regex
/home/mario/local/chicken-4.8.0.3/bin/csi -bnq -setup-mode -e "(require-library setup-api)" -e "(import setup-api)" -e "(setup-error-handling)" -e "(extension-name-and-version '(\"regex\" \"1.0\"))" -e "(destination-prefix \"/home/mario/salmonella/4.8.0.3/1/repo\")" -e "(runtime-prefix \"/home/mario/salmonella/4.8.0.3/1/repo\")" /tmp/temp6abf.24859/regex/regex.setup
/home/mario/local/chicken-4.8.0.3/bin/csc -feature compiling-extension -setup-mode -s -O3 -d1 regex.scm -JS
/home/mario/local/chicken-4.8.0.3/bin/csc -feature compiling-extension -setup-mode -s -O3 -d0 regex.import.scm
cp -r regex.so /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/regex.so
chmod a+r /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/regex.so
cp -r regex.import.so /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/regex.import.so
chmod a+r /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/regex.import.so
chmod a+r /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/regex.setup-info
installing make:1.7 ...
changing current directory to /tmp/temp6abf.24859/make
/home/mario/local/chicken-4.8.0.3/bin/csi -bnq -setup-mode -e "(require-library setup-api)" -e "(import setup-api)" -e "(setup-error-handling)" -e "(extension-name-and-version '(\"make\" \"1.7\"))" -e "(destination-prefix \"/home/mario/salmonella/4.8.0.3/1/repo\")" -e "(runtime-prefix \"/home/mario/salmonella/4.8.0.3/1/repo\")" /tmp/temp6abf.24859/make/make.setup
/home/mario/local/chicken-4.8.0.3/bin/csc -feature compiling-extension -setup-mode -s -O2 -d1 -j make make.scm
/home/mario/local/chicken-4.8.0.3/bin/csc -feature compiling-extension -setup-mode -s -O2 -d1 make.import.scm
cp -r make.so /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/make.so
chmod a+r /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/make.so
cp -r make.import.so /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/make.import.so
chmod a+r /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/make.import.so
chmod a+r /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/make.setup-info
installing bind:1.1 ...
changing current directory to /tmp/temp6abf.24859/bind
/home/mario/local/chicken-4.8.0.3/bin/csi -bnq -setup-mode -e "(require-library setup-api)" -e "(import setup-api)" -e "(setup-error-handling)" -e "(extension-name-and-version '(\"bind\" \"1.1\"))" -e "(destination-prefix \"/home/mario/salmonella/4.8.0.3/1/repo\")" -e "(runtime-prefix \"/home/mario/salmonella/4.8.0.3/1/repo\")" /tmp/temp6abf.24859/bind/bind.setup
make: making c.l.scm
/home/mario/local/chicken-4.8.0.3/bin/csi -s runsilex.scm
make: making bind-translator.so
/home/mario/local/chicken-4.8.0.3/bin/csc -feature compiling-extension -setup-mode -sS -O3 -d0 bind-translator.scm -JS
Warning: redefinition of imported value binding: lexer-init-buffer-len
Warning: redefinition of imported value binding: lexer-integer-newline
Warning: redefinition of imported value binding: lexer-raw-IS-maker
Warning: redefinition of imported value binding: lexer-make-IS
Warning: redefinition of imported value binding: lexer-get-func-getc
Warning: redefinition of imported value binding: lexer-get-func-ungetc
Warning: redefinition of imported value binding: lexer-get-func-line
Warning: redefinition of imported value binding: lexer-get-func-column
Warning: redefinition of imported value binding: lexer-get-func-offset
Warning: redefinition of imported value binding: lexer-make-tree-lexer
Warning: redefinition of imported value binding: lexer-make-char-lexer
Warning: redefinition of imported value binding: lexer-make-code-lexer
Warning: redefinition of imported value binding: lexer-make-lexer
Warning: redefinition of imported value binding: lexer
make: making bind-translator.import.so
/home/mario/local/chicken-4.8.0.3/bin/csc -feature compiling-extension -setup-mode -s -O3 -d0 bind-translator.import.scm
make: making bind.so
/home/mario/local/chicken-4.8.0.3/bin/csc -feature compiling-extension -setup-mode -s -O3 -d0 bind.scm -JS
make: making bind.import.so
/home/mario/local/chicken-4.8.0.3/bin/csc -feature compiling-extension -setup-mode -s -O3 -d0 bind.import.scm
make: making cplusplus-object.so
/home/mario/local/chicken-4.8.0.3/bin/csc -feature compiling-extension -setup-mode -s -O3 -S -d0 cplusplus-object.scm -J
make: making cplusplus-object.import.so
/home/mario/local/chicken-4.8.0.3/bin/csc -feature compiling-extension -setup-mode -s -O3 -d0 cplusplus-object.import.scm
make: making chicken-bind
/home/mario/local/chicken-4.8.0.3/bin/csc -feature compiling-extension -setup-mode -O3 -d0 -S chicken-bind.scm
make: made c.l.scm
make: made bind-translator.so
make: made bind-translator.import.so
make: made bind.so
make: made bind.import.so
make: made cplusplus-object.so
make: made cplusplus-object.import.so
make: made chicken-bind
cp -r bind.so /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/bind.so
chmod a+r /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/bind.so
cp -r bind.import.so /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/bind.import.so
chmod a+r /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/bind.import.so
cp -r bind-translator.so /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/bind-translator.so
chmod a+r /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/bind-translator.so
cp -r bind-translator.import.so /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/bind-translator.import.so
chmod a+r /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/bind-translator.import.so
chmod a+r /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/bind.setup-info
cp -r cplusplus-object.so /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/cplusplus-object.so
chmod a+r /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/cplusplus-object.so
cp -r cplusplus-object.import.so /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/cplusplus-object.import.so
chmod a+r /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/cplusplus-object.import.so
chmod a+r /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/cplusplus-object.setup-info
mkdir -p /home/mario/salmonella/4.8.0.3/1/repo/bin
chmod a+x /home/mario/salmonella/4.8.0.3/1/repo/bin
cp -r chicken-bind /home/mario/salmonella/4.8.0.3/1/repo/bin/chicken-bind
chmod a+r /home/mario/salmonella/4.8.0.3/1/repo/bin/chicken-bind
chmod a+r /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/chicken-bind.setup-info
installing blas:4.0 ...
changing current directory to /tmp/temp6abf.24859/blas
/home/mario/local/chicken-4.8.0.3/bin/csi -bnq -setup-mode -e "(require-library setup-api)" -e "(import setup-api)" -e "(setup-error-handling)" -e "(extension-name-and-version '(\"blas\" \"4.0\"))" -e "(destination-prefix \"/home/mario/salmonella/4.8.0.3/1/repo\")" -e "(runtime-prefix \"/home/mario/salmonella/4.8.0.3/1/repo\")" /tmp/temp6abf.24859/blas/blas.setup
/home/mario/local/chicken-4.8.0.3/bin/csc -feature compiling-extension -setup-mode -O3 -d0 -s blas.scm -j blas -L " -lblas -lm "
/home/mario/local/chicken-4.8.0.3/bin/csc -feature compiling-extension -setup-mode -O2 -d0 -s blas.import.scm
cp -r blas.so /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/blas.so
chmod a+r /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/blas.so
cp -r blas.import.so /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/blas.import.so
chmod a+r /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/blas.import.so
chmod a+r /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/blas.setup-info
installing atlas-lapack: ...
changing current directory to .
/home/mario/local/chicken-4.8.0.3/bin/csi -bnq -setup-mode -e "(require-library setup-api)" -e "(import setup-api)" -e "(setup-error-handling)" -e "(extension-name-and-version '(\"atlas-lapack\" \"\"))" -e "(destination-prefix \"/home/mario/salmonella/4.8.0.3/1/repo\")" -e "(runtime-prefix \"/home/mario/salmonella/4.8.0.3/1/repo\")" atlas-lapack.setup
/home/mario/local/chicken-4.8.0.3/bin/csc -feature compiling-extension -setup-mode -O3 -d0 -s atlas-lapack.scm -j atlas-lapack -L " -llapack_atlas -latlas -lm "
/home/mario/local/chicken-4.8.0.3/bin/csc -feature compiling-extension -setup-mode -O2 -d0 -s atlas-lapack.import.scm
cp -r atlas-lapack.so /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/atlas-lapack.so
chmod a+r /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/atlas-lapack.so
cp -r atlas-lapack.import.so /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/atlas-lapack.import.so
chmod a+r /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/atlas-lapack.import.so
chmod a+r /home/mario/salmonella/4.8.0.3/1/repo/lib/chicken/6/atlas-lapack.setup-info