Installation output for nemo

Installation time: 3m12s

/root/salmonella-run-publish/chicken/bin/chicken-install  -prefix /root/salmonella-run-publish/salmonella-repo/repo
retrieving ...
checking platform for `nemo' ...
checking dependencies for `nemo' ...
 missing: iexpr, graph-cycles, strictly-pretty, varsubst
retrieving ...
connecting to host "chicken.kitten-technologies.co.uk", port 80 ...
requesting "/henrietta.cgi?name=iexpr&mode=default" ...
reading response ...
HTTP/1.1 200 OK
Date: Fri, 11 May 2012 22:15:51 GMT
Server: Apache/2.2.19 (Unix) mod_ssl/2.2.19 OpenSSL/0.9.9-dev DAV/2 SVN/1.6.17 PHP/5.2.17 mod_fastcgi/2.4.6
Connection: close
Transfer-Encoding: chunked
Content-Type: text/plain
reading chunks .
reading files ...
  ./iexpr.grm
  ./iexpr.l
  ./iexpr.meta
  ./iexpr.scm
  ./iexpr.setup
 iexpr located at /tmp/temp565d/iexpr
connecting to host "chicken.kitten-technologies.co.uk", port 80 ...
requesting "/henrietta.cgi?name=graph-cycles&mode=default" ...
reading response ...
HTTP/1.1 200 OK
Date: Fri, 11 May 2012 22:15:51 GMT
Server: Apache/2.2.19 (Unix) mod_ssl/2.2.19 OpenSSL/0.9.9-dev DAV/2 SVN/1.6.17 PHP/5.2.17 mod_fastcgi/2.4.6
Connection: close
Transfer-Encoding: chunked
Content-Type: text/plain
reading chunks .
reading files ...
  ./graph-cycles.meta
  ./graph-cycles.scm
  ./graph-cycles.setup
 graph-cycles located at /tmp/temp565d/graph-cycles
connecting to host "chicken.kitten-technologies.co.uk", port 80 ...
requesting "/henrietta.cgi?name=strictly-pretty&mode=default" ...
reading response ...
HTTP/1.1 200 OK
Date: Fri, 11 May 2012 22:15:51 GMT
Server: Apache/2.2.19 (Unix) mod_ssl/2.2.19 OpenSSL/0.9.9-dev DAV/2 SVN/1.6.17 PHP/5.2.17 mod_fastcgi/2.4.6
Connection: close
Transfer-Encoding: chunked
Content-Type: text/plain
reading chunks .
reading files ...
  ./strictly-pretty.meta
  ./strictly-pretty.scm
  ./strictly-pretty.setup
 strictly-pretty located at /tmp/temp565d/strictly-pretty
connecting to host "chicken.kitten-technologies.co.uk", port 80 ...
requesting "/henrietta.cgi?name=varsubst&mode=default" ...
reading response ...
HTTP/1.1 200 OK
Date: Fri, 11 May 2012 22:15:51 GMT
Server: Apache/2.2.19 (Unix) mod_ssl/2.2.19 OpenSSL/0.9.9-dev DAV/2 SVN/1.6.17 PHP/5.2.17 mod_fastcgi/2.4.6
Connection: close
Transfer-Encoding: chunked
Content-Type: text/plain
reading chunks .
reading files ...
  ./varsubst.meta
  ./test.scm
  ./varsubst.scm
  ./varsubst.setup
 varsubst located at /tmp/temp565d/varsubst
checking platform for `varsubst' ...
checking dependencies for `varsubst' ...
checking platform for `strictly-pretty' ...
checking dependencies for `strictly-pretty' ...
checking platform for `graph-cycles' ...
checking dependencies for `graph-cycles' ...
checking platform for `iexpr' ...
checking dependencies for `iexpr' ...
install order:
("iexpr" "graph-cycles" "strictly-pretty" "varsubst" "nemo")
installing iexpr:1.9 ...
changing current directory to /tmp/temp565d/iexpr
  /root/salmonella-run-publish/chicken/bin/csi -bnq -setup-mode -e "(require-library setup-api)" -e "(import setup-api)" -e "(setup-error-handling)" -e "(extension-name-and-version '(\"iexpr\" \"1.9\"))" -e "(destination-prefix \"/root/salmonella-run-publish/salmonella-repo/repo\")" -e "(runtime-prefix \"/root/salmonella-run-publish/salmonella-repo/repo\")" /tmp/temp565d/iexpr/iexpr.setup
make: making iexpr.l.scm
  /root/salmonella-run-publish/chicken/bin/csi -n -R silex -e '(lex "iexpr.l" "iexpr.l.scm" (quote counters) (quote line))'
make: making iexpr.grm.scm
  /root/salmonella-run-publish/chicken/bin/csi -s iexpr.grm
make: making iexpr.so
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O -d2 -S -s iexpr.scm -j iexpr
make: making iexpr.import.so
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -s iexpr.import.scm
make: made iexpr.l.scm
make: made iexpr.grm.scm
make: made iexpr.so
make: made iexpr.import.so
  cp -r iexpr.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/iexpr.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/iexpr.so
  cp -r iexpr.import.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/iexpr.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/iexpr.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/iexpr.setup-info
installing graph-cycles:1.11 ...
changing current directory to /tmp/temp565d/graph-cycles
  /root/salmonella-run-publish/chicken/bin/csi -bnq -setup-mode -e "(require-library setup-api)" -e "(import setup-api)" -e "(setup-error-handling)" -e "(extension-name-and-version '(\"graph-cycles\" \"1.11\"))" -e "(destination-prefix \"/root/salmonella-run-publish/salmonella-repo/repo\")" -e "(runtime-prefix \"/root/salmonella-run-publish/salmonella-repo/repo\")" /tmp/temp565d/graph-cycles/graph-cycles.setup
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O2 -d0 -s graph-cycles.scm -j graph-cycles
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O2 -d0 -s graph-cycles.import.scm
  cp -r graph-cycles.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/graph-cycles.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/graph-cycles.so
  cp -r graph-cycles.import.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/graph-cycles.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/graph-cycles.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/graph-cycles.setup-info
installing strictly-pretty:1.4 ...
changing current directory to /tmp/temp565d/strictly-pretty
  /root/salmonella-run-publish/chicken/bin/csi -bnq -setup-mode -e "(require-library setup-api)" -e "(import setup-api)" -e "(setup-error-handling)" -e "(extension-name-and-version '(\"strictly-pretty\" \"1.4\"))" -e "(destination-prefix \"/root/salmonella-run-publish/salmonella-repo/repo\")" -e "(runtime-prefix \"/root/salmonella-run-publish/salmonella-repo/repo\")" /tmp/temp565d/strictly-pretty/strictly-pretty.setup
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O2 -d0 -s strictly-pretty.scm -j strictly-pretty
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O2 -d0 -s strictly-pretty.import.scm
  cp -r strictly-pretty.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/strictly-pretty.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/strictly-pretty.so
  cp -r strictly-pretty.import.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/strictly-pretty.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/strictly-pretty.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/strictly-pretty.setup-info
installing varsubst:1.2 ...
changing current directory to /tmp/temp565d/varsubst
  /root/salmonella-run-publish/chicken/bin/csi -bnq -setup-mode -e "(require-library setup-api)" -e "(import setup-api)" -e "(setup-error-handling)" -e "(extension-name-and-version '(\"varsubst\" \"1.2\"))" -e "(destination-prefix \"/root/salmonella-run-publish/salmonella-repo/repo\")" -e "(runtime-prefix \"/root/salmonella-run-publish/salmonella-repo/repo\")" /tmp/temp565d/varsubst/varsubst.setup
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -d2 -O -s varsubst.scm -j varsubst
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -d2 -O -s varsubst.import.scm
  cp -r varsubst.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/varsubst.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/varsubst.so
  cp -r varsubst.import.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/varsubst.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/varsubst.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/varsubst.setup-info
installing nemo: ...
changing current directory to .
  /root/salmonella-run-publish/chicken/bin/csi -bnq -setup-mode -e "(require-library setup-api)" -e "(import setup-api)" -e "(setup-error-handling)" -e "(extension-name-and-version '(\"nemo\" \"\"))" -e "(destination-prefix \"/root/salmonella-run-publish/salmonella-repo/repo\")" -e "(runtime-prefix \"/root/salmonella-run-publish/salmonella-repo/repo\")" nemo.setup
make: making expr.grm.scm
  /root/salmonella-run-publish/chicken/bin/csi -s expr.grm
make: making nemo-core.so
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O -d2 -s nemo-core.scm -j nemo-core
make: making nemo-core.import.so
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O2 -s nemo-core.import.scm
make: made expr.grm.scm
make: made nemo-core.so
make: made nemo-core.import.so
  cp -r nemo-core.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-core.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-core.so
  cp -r nemo-core.import.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-core.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-core.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-core.setup-info
make: making nemo-utils.so
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O -d2 -s nemo-utils.scm -j nemo-utils
make: making nemo-utils.import.so
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O2 -s nemo-utils.import.scm
make: made nemo-utils.so
make: made nemo-utils.import.so
  cp -r nemo-utils.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-utils.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-utils.so
  cp -r nemo-utils.import.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-utils.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-utils.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-utils.setup-info
make: making nemo-synapse.so
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O -d2 -s nemo-synapse.scm -j nemo-synapse
make: making nemo-synapse.import.so
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O2 -s nemo-synapse.import.scm
make: made nemo-synapse.so
make: made nemo-synapse.import.so
  cp -r nemo-synapse.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-synapse.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-synapse.so
  cp -r nemo-synapse.import.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-synapse.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-synapse.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-synapse.setup-info
make: making nemo-gate-complex.so
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O -d2 -s nemo-gate-complex.scm -j nemo-gate-complex
make: making nemo-gate-complex.import.so
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O2 -s nemo-gate-complex.import.scm
make: made nemo-gate-complex.so
make: made nemo-gate-complex.import.so
  cp -r nemo-gate-complex.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-gate-complex.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-gate-complex.so
  cp -r nemo-gate-complex.import.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-gate-complex.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-gate-complex.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-gate-complex.setup-info
make: making nemo-macros.so
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O -d2 -s nemo-macros.scm -j nemo-macros
make: making nemo-macros.import.so
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O2 -s nemo-macros.import.scm
make: made nemo-macros.so
make: made nemo-macros.import.so
  cp -r nemo-macros.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-macros.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-macros.so
  cp -r nemo-macros.import.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-macros.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-macros.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-macros.setup-info
make: making nemo-nmodl.so
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O -d2 -s nemo-nmodl.scm -j nemo-nmodl
make: making nemo-nmodl.import.so
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O2 -s nemo-nmodl.import.scm
make: made nemo-nmodl.so
make: made nemo-nmodl.import.so
  cp -r nemo-nmodl.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-nmodl.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-nmodl.so
  cp -r nemo-nmodl.import.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-nmodl.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-nmodl.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-nmodl.setup-info
make: making nemo-matlab.so
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O -d2 -s nemo-matlab.scm -j nemo-matlab
make: making nemo-matlab.import.so
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O2 -s nemo-matlab.import.scm
make: made nemo-matlab.so
make: made nemo-matlab.import.so
  cp -r nemo-matlab.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-matlab.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-matlab.so
  cp -r nemo-matlab.import.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-matlab.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-matlab.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-matlab.setup-info
make: making nemo-nest.so
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O -d2 -s nemo-nest.scm -j nemo-nest

Warning: redefinition of imported value binding: pp
make: making nemo-nest.import.so
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O2 -s nemo-nest.import.scm
make: made nemo-nest.so
make: made nemo-nest.import.so
  cp -r nemo-nest.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-nest.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-nest.so
  cp -r nemo-nest.import.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-nest.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-nest.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-nest.setup-info
make: making nemo-pyparams.so
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O -d2 -s nemo-pyparams.scm -j nemo-pyparams

Warning: in local procedure `def-filename13079',
  in toplevel procedure `nemo-pyparams#nemo:pyparams-translator':
  (nemo-pyparams.scm:742) in procedure call to `body1307713084', expected argument #1 of type `string', but was given an argument of type `boolean'
make: making nemo-pyparams.import.so
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O2 -s nemo-pyparams.import.scm
make: made nemo-pyparams.so
make: made nemo-pyparams.import.so
  cp -r nemo-pyparams.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-pyparams.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-pyparams.so
  cp -r nemo-pyparams.import.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-pyparams.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-pyparams.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-pyparams.setup-info
make: making nemo-hh.so
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O -d2 -s extensions/nemo-hh.scm -j nemo-hh -o nemo-hh.so
make: making nemo-hh.import.so
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O2 -s nemo-hh.import.scm
make: made nemo-hh.so
make: made nemo-hh.import.so
  cp -r nemo-hh.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-hh.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-hh.so
  cp -r nemo-hh.import.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-hh.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-hh.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-hh.setup-info
make: making nemo-vclamp.so
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O -d2 -s extensions/nemo-vclamp.scm -j nemo-vclamp -o nemo-vclamp.so
make: making nemo-vclamp.import.so
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O2 -s nemo-vclamp.import.scm
make: made nemo-vclamp.so
make: made nemo-vclamp.import.so
  cp -r nemo-vclamp.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-vclamp.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-vclamp.so
  cp -r nemo-vclamp.import.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-vclamp.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-vclamp.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo-vclamp.setup-info
make: making nemo
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -uses files -d2 nemo.scm
make: made nemo
  cp -r nemo /root/salmonella-run-publish/salmonella-repo/repo/bin/nemo
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/bin/nemo
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/nemo.setup-info