Installation output for 9ML-toolkit

Installation time: 3m53s

/root/salmonella-run-publish/chicken/bin/chicken-install  -prefix /root/salmonella-run-publish/salmonella-repo/repo
retrieving ...
checking platform for `9ML-toolkit' ...
checking dependencies for `9ML-toolkit' ...
 missing: static-modules, miniML, object-graph, lalr, signal-diagram
retrieving ...
connecting to host "chicken.kitten-technologies.co.uk", port 80 ...
requesting "/henrietta.cgi?name=static-modules&mode=default" ...
reading response ...
HTTP/1.1 200 OK
Date: Fri, 11 May 2012 21:50:55 GMT
Server: Apache/2.2.19 (Unix) mod_ssl/2.2.19 OpenSSL/0.9.9-dev DAV/2 SVN/1.6.17 PHP/5.2.17 mod_fastcgi/2.4.6
Connection: close
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reading chunks ..
reading files ...
  ./static-modules.setup
  ./static-modules.meta
  ./static-modules.scm
 static-modules located at /tmp/tempdb9a/static-modules
connecting to host "chicken.kitten-technologies.co.uk", port 80 ...
requesting "/henrietta.cgi?name=miniML&mode=default" ...
reading response ...
HTTP/1.1 200 OK
Date: Fri, 11 May 2012 21:50:56 GMT
Server: Apache/2.2.19 (Unix) mod_ssl/2.2.19 OpenSSL/0.9.9-dev DAV/2 SVN/1.6.17 PHP/5.2.17 mod_fastcgi/2.4.6
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reading chunks .....
reading files ...
  ./examples/
  ./examples/NatPairOrder.miniML
  ./examples/interpreter.scm
  ./examples/list.miniML
  ./examples/num.miniML
  ./examples/record.miniML
  ./examples/string.miniML
  ./miniML.setup
  ./miniML.grm
  ./miniML.l
  ./miniML.meta
  ./miniML.scm
  ./miniMLsyntax.scm
  ./miniMLeval.scm
  ./miniMLparse.scm
  ./miniMLvalue.scm
 miniML located at /tmp/tempdb9a/miniML
connecting to host "chicken.kitten-technologies.co.uk", port 80 ...
requesting "/henrietta.cgi?name=object-graph&mode=default" ...
reading response ...
HTTP/1.1 200 OK
Date: Fri, 11 May 2012 21:50:56 GMT
Server: Apache/2.2.19 (Unix) mod_ssl/2.2.19 OpenSSL/0.9.9-dev DAV/2 SVN/1.6.17 PHP/5.2.17 mod_fastcgi/2.4.6
Connection: close
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reading chunks .
reading files ...
  ./object-graph.meta
  ./object-graph.scm
  ./object-graph.setup
 object-graph located at /tmp/tempdb9a/object-graph
connecting to host "chicken.kitten-technologies.co.uk", port 80 ...
requesting "/henrietta.cgi?name=lalr&mode=default" ...
reading response ...
HTTP/1.1 200 OK
Date: Fri, 11 May 2012 21:50:57 GMT
Server: Apache/2.2.19 (Unix) mod_ssl/2.2.19 OpenSSL/0.9.9-dev DAV/2 SVN/1.6.17 PHP/5.2.17 mod_fastcgi/2.4.6
Connection: close
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reading chunks .....
reading files ...
  ./lalr-driver.scm
  ./calc.grm
  ./calc.scm
  ./char-terminals.patch.txt
  ./lalr.meta
  ./lalr.scm
  ./lalr.setup
 lalr located at /tmp/tempdb9a/lalr
connecting to host "chicken.kitten-technologies.co.uk", port 80 ...
requesting "/henrietta.cgi?name=signal-diagram&mode=default" ...
reading response ...
HTTP/1.1 200 OK
Date: Fri, 11 May 2012 21:50:57 GMT
Server: Apache/2.2.19 (Unix) mod_ssl/2.2.19 OpenSSL/0.9.9-dev DAV/2 SVN/1.6.17 PHP/5.2.17 mod_fastcgi/2.4.6
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reading chunks ....
reading files ...
  ./examples/
  ./examples/Destexhe94_run.mlb
  ./examples/Destexhe94.scm
  ./examples/Izhikevich03_run.mlb
  ./examples/Izhikevich03.scm
  ./examples/Izhikevich03_oct.cc
  ./examples/Izhikevich03_plot.m
  ./examples/Izhikevich03_run.m
  ./examples/Izhikevich03_run.scm
  ./examples/Izhikevich03_run.sml
  ./examples/Morris-Lecar81.scm
  ./examples/Morris-Lecar81_run.m
  ./examples/Morris-Lecar81_run.mlb
  ./examples/Morris-Lecar81_run.scm
  ./examples/Morris-Lecar81_run.sml
  ./signal-diagram.meta
  ./expr-utils.scm
  ./signal-diagram-dynamics.scm
  ./signal-diagram.scm
  ./signal-diagram.setup
 signal-diagram located at /tmp/tempdb9a/signal-diagram
checking platform for `signal-diagram' ...
checking dependencies for `signal-diagram' ...
 missing: make, flsim
retrieving ...
connecting to host "chicken.kitten-technologies.co.uk", port 80 ...
requesting "/henrietta.cgi?name=make&mode=default" ...
reading response ...
HTTP/1.1 200 OK
Date: Fri, 11 May 2012 21:50:58 GMT
Server: Apache/2.2.19 (Unix) mod_ssl/2.2.19 OpenSSL/0.9.9-dev DAV/2 SVN/1.6.17 PHP/5.2.17 mod_fastcgi/2.4.6
Connection: close
Content-Length: 9016
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reading files ...
  ./make.meta
  ./make.scm
  ./make.setup
 make located at /tmp/tempdb9a/make
connecting to host "chicken.kitten-technologies.co.uk", port 80 ...
requesting "/henrietta.cgi?name=flsim&mode=default" ...
reading response ...
HTTP/1.1 200 OK
Date: Fri, 11 May 2012 21:50:58 GMT
Server: Apache/2.2.19 (Unix) mod_ssl/2.2.19 OpenSSL/0.9.9-dev DAV/2 SVN/1.6.17 PHP/5.2.17 mod_fastcgi/2.4.6
Connection: close
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reading chunks ....
reading files ...
  ./octave-lib/
  ./octave-lib/ode15s.m
  ./sml-lib/
  ./sml-lib/rk/
  ./sml-lib/rk/rktest.sml
  ./sml-lib/rk/rk.mlb
  ./sml-lib/rk/rk.sml
  ./runge-kutta.scm
  ./flsim.meta
  ./flsim.scm
  ./flsim.setup
 flsim located at /tmp/tempdb9a/flsim
checking platform for `flsim' ...
checking dependencies for `flsim' ...
 missing: make
retrieving ...
checking platform for `make' ...
checking dependencies for `make' ...
checking platform for `lalr' ...
checking dependencies for `lalr' ...
checking platform for `object-graph' ...
checking dependencies for `object-graph' ...
checking platform for `miniML' ...
checking dependencies for `miniML' ...
 missing: make, static-modules, lalr
retrieving ...
checking platform for `static-modules' ...
checking dependencies for `static-modules' ...
install order:
("static-modules"
 "make"
 "lalr"
 "miniML"
 "object-graph"
 "flsim"
 "signal-diagram"
 "9ML-toolkit")
installing static-modules:1.5 ...
changing current directory to /tmp/tempdb9a/static-modules
  /root/salmonella-run-publish/chicken/bin/csi -bnq -setup-mode -e "(require-library setup-api)" -e "(import setup-api)" -e "(setup-error-handling)" -e "(extension-name-and-version '(\"static-modules\" \"1.5\"))" -e "(destination-prefix \"/root/salmonella-run-publish/salmonella-repo/repo\")" -e "(runtime-prefix \"/root/salmonella-run-publish/salmonella-repo/repo\")" /tmp/tempdb9a/static-modules/static-modules.setup
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O -d2 -s static-modules.scm -j static-modules
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O -d2 -s static-modules.import.scm
  cp -r static-modules.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/static-modules.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/static-modules.so
  cp -r static-modules.import.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/static-modules.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/static-modules.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/static-modules.setup-info
installing make:1.6 ...
changing current directory to /tmp/tempdb9a/make
  /root/salmonella-run-publish/chicken/bin/csi -bnq -setup-mode -e "(require-library setup-api)" -e "(import setup-api)" -e "(setup-error-handling)" -e "(extension-name-and-version '(\"make\" \"1.6\"))" -e "(destination-prefix \"/root/salmonella-run-publish/salmonella-repo/repo\")" -e "(runtime-prefix \"/root/salmonella-run-publish/salmonella-repo/repo\")" /tmp/tempdb9a/make/make.setup
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -s -O2 -d1 -j make make.scm
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -s -O2 -d1 make.import.scm
  cp -r make.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/make.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/make.so
  cp -r make.import.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/make.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/make.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/make.setup-info
installing lalr:2.4.2 ...
changing current directory to /tmp/tempdb9a/lalr
  /root/salmonella-run-publish/chicken/bin/csi -bnq -setup-mode -e "(require-library setup-api)" -e "(import setup-api)" -e "(setup-error-handling)" -e "(extension-name-and-version '(\"lalr\" \"2.4.2\"))" -e "(destination-prefix \"/root/salmonella-run-publish/salmonella-repo/repo\")" -e "(runtime-prefix \"/root/salmonella-run-publish/salmonella-repo/repo\")" /tmp/tempdb9a/lalr/lalr.setup
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O2 -d0 -s lalr.scm -j lalr
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O2 -d0 -s lalr.import.scm
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O2 -d0 -s lalr-driver.scm -j lalr-driver
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O2 -d0 -s lalr-driver.import.scm
  cp -r lalr.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/lalr.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/lalr.so
  cp -r lalr.import.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/lalr.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/lalr.import.so
  cp -r lalr-driver.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/lalr-driver.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/lalr-driver.so
  cp -r lalr-driver.import.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/lalr-driver.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/lalr-driver.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/lalr.setup-info
installing miniML:1.9 ...
changing current directory to /tmp/tempdb9a/miniML
  /root/salmonella-run-publish/chicken/bin/csi -bnq -setup-mode -e "(require-library setup-api)" -e "(import setup-api)" -e "(setup-error-handling)" -e "(extension-name-and-version '(\"miniML\" \"1.9\"))" -e "(destination-prefix \"/root/salmonella-run-publish/salmonella-repo/repo\")" -e "(runtime-prefix \"/root/salmonella-run-publish/salmonella-repo/repo\")" /tmp/tempdb9a/miniML/miniML.setup
make: making miniML.so
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O -d2 -S -s miniML.scm -j miniML
make: making miniML.import.so
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -s miniML.import.scm
make: made miniML.so
make: made miniML.import.so
  cp -r miniML.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/miniML.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/miniML.so
  cp -r miniML.import.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/miniML.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/miniML.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/miniML.setup-info
make: making miniMLsyntax.so
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O -d2 -S -s miniMLsyntax.scm -j miniMLsyntax
make: making miniMLsyntax.import.so
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -s miniMLsyntax.import.scm
make: made miniMLsyntax.so
make: made miniMLsyntax.import.so
  cp -r miniMLsyntax.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/miniMLsyntax.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/miniMLsyntax.so
  cp -r miniMLsyntax.import.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/miniMLsyntax.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/miniMLsyntax.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/miniMLsyntax.setup-info
make: making miniML.l.scm
  /root/salmonella-run-publish/chicken/bin/csi -n -R silex -e '(lex "miniML.l" "miniML.l.scm" (quote counters) (quote line))'
make: making miniML.grm.scm
  /root/salmonella-run-publish/chicken/bin/csi -s miniML.grm
make: making miniMLparse.so
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O -d2 -S -s miniMLparse.scm -j miniMLparse
make: making miniMLparse.import.so
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -s miniMLparse.import.scm
make: made miniML.l.scm
make: made miniML.grm.scm
make: made miniMLparse.so
make: made miniMLparse.import.so
  cp -r miniMLparse.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/miniMLparse.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/miniMLparse.so
  cp -r miniMLparse.import.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/miniMLparse.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/miniMLparse.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/miniMLparse.setup-info
make: making miniMLvalue.so
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O -d2 -S -s miniMLvalue.scm -j miniMLvalue
make: making miniMLvalue.import.so
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -s miniMLvalue.import.scm
make: made miniMLvalue.so
make: made miniMLvalue.import.so
  cp -r miniMLvalue.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/miniMLvalue.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/miniMLvalue.so
  cp -r miniMLvalue.import.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/miniMLvalue.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/miniMLvalue.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/miniMLvalue.setup-info
make: making miniMLeval.so
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O -d2 -s miniMLeval.scm -j miniMLeval
make: making miniMLeval.import.so
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -s miniMLeval.import.scm
make: made miniMLeval.so
make: made miniMLeval.import.so
  cp -r miniMLeval.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/miniMLeval.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/miniMLeval.so
  cp -r miniMLeval.import.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/miniMLeval.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/miniMLeval.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/miniMLeval.setup-info
installing object-graph:1.1 ...
changing current directory to /tmp/tempdb9a/object-graph
  /root/salmonella-run-publish/chicken/bin/csi -bnq -setup-mode -e "(require-library setup-api)" -e "(import setup-api)" -e "(setup-error-handling)" -e "(extension-name-and-version '(\"object-graph\" \"1.1\"))" -e "(destination-prefix \"/root/salmonella-run-publish/salmonella-repo/repo\")" -e "(runtime-prefix \"/root/salmonella-run-publish/salmonella-repo/repo\")" /tmp/tempdb9a/object-graph/object-graph.setup
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O -d2 -s object-graph.scm -j object-graph
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O2 -d0 -s object-graph.import.scm
  cp -r object-graph.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/object-graph.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/object-graph.so
  cp -r object-graph.import.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/object-graph.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/object-graph.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/object-graph.setup-info
installing flsim:2.3 ...
changing current directory to /tmp/tempdb9a/flsim
  /root/salmonella-run-publish/chicken/bin/csi -bnq -setup-mode -e "(require-library setup-api)" -e "(import setup-api)" -e "(setup-error-handling)" -e "(extension-name-and-version '(\"flsim\" \"2.3\"))" -e "(destination-prefix \"/root/salmonella-run-publish/salmonella-repo/repo\")" -e "(runtime-prefix \"/root/salmonella-run-publish/salmonella-repo/repo\")" /tmp/tempdb9a/flsim/flsim.setup
make: making flsim.so
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O -d2 -S -s flsim.scm -j flsim
make: making flsim.import.so
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O -d2 -S -s flsim.import.scm
make: made flsim.so
make: made flsim.import.so
  cp -r flsim.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/flsim.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/flsim.so
  cp -r flsim.import.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/flsim.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/flsim.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/flsim.setup-info
make: making runge-kutta.so
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O2 -S -s runge-kutta.scm -j runge-kutta
make: making runge-kutta.import.so
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O2 -S -s runge-kutta.import.scm
make: made runge-kutta.so
make: made runge-kutta.import.so
  cp -r runge-kutta.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/runge-kutta.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/runge-kutta.so
  cp -r runge-kutta.import.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/runge-kutta.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/runge-kutta.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/runge-kutta.setup-info
  mkdir -p /root/salmonella-run-publish/salmonella-repo/repo/share/chicken/flsim/sml-lib/rk
  chmod a+x /root/salmonella-run-publish/salmonella-repo/repo/share/chicken/flsim/sml-lib/rk
  cp -r sml-lib/rk/rk.sml /root/salmonella-run-publish/salmonella-repo/repo/share/chicken/flsim/sml-lib/rk/rk.sml
  cp -r sml-lib/rk/rk.mlb /root/salmonella-run-publish/salmonella-repo/repo/share/chicken/flsim/sml-lib/rk/rk.mlb
  mkdir -p /root/salmonella-run-publish/salmonella-repo/repo/share/chicken/flsim/octave-lib
  chmod a+x /root/salmonella-run-publish/salmonella-repo/repo/share/chicken/flsim/octave-lib
  cp -r octave-lib/ode15s.m /root/salmonella-run-publish/salmonella-repo/repo/share/chicken/flsim/octave-lib/ode15s.m
installing signal-diagram:2.3 ...
changing current directory to /tmp/tempdb9a/signal-diagram
  /root/salmonella-run-publish/chicken/bin/csi -bnq -setup-mode -e "(require-library setup-api)" -e "(import setup-api)" -e "(setup-error-handling)" -e "(extension-name-and-version '(\"signal-diagram\" \"2.3\"))" -e "(destination-prefix \"/root/salmonella-run-publish/salmonella-repo/repo\")" -e "(runtime-prefix \"/root/salmonella-run-publish/salmonella-repo/repo\")" /tmp/tempdb9a/signal-diagram/signal-diagram.setup
make: making signal-diagram.so
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O -d2 -S -s signal-diagram.scm -j signal-diagram
make: making signal-diagram.import.so
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O -d2 -S -s signal-diagram.import.scm
make: made signal-diagram.so
make: made signal-diagram.import.so
  cp -r signal-diagram.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/signal-diagram.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/signal-diagram.so
  cp -r signal-diagram.import.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/signal-diagram.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/signal-diagram.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/signal-diagram.setup-info
make: making signal-diagram-dynamics.so
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O -d2 -S -s signal-diagram-dynamics.scm -j signal-diagram-dynamics
make: making signal-diagram-dynamics.import.so
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O -d2 -S -s signal-diagram-dynamics.import.scm
make: made signal-diagram-dynamics.so
make: made signal-diagram-dynamics.import.so
  cp -r signal-diagram-dynamics.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/signal-diagram-dynamics.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/signal-diagram-dynamics.so
  cp -r signal-diagram-dynamics.import.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/signal-diagram-dynamics.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/signal-diagram-dynamics.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/signal-diagram-dynamics.setup-info
installing 9ML-toolkit: ...
changing current directory to .
  /root/salmonella-run-publish/chicken/bin/csi -bnq -setup-mode -e "(require-library setup-api)" -e "(import setup-api)" -e "(setup-error-handling)" -e "(extension-name-and-version '(\"9ML-toolkit\" \"\"))" -e "(destination-prefix \"/root/salmonella-run-publish/salmonella-repo/repo\")" -e "(runtime-prefix \"/root/salmonella-run-publish/salmonella-repo/repo\")" 9ML-toolkit.setup
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O -d2 -S -s 9ML-toolkit.scm -o 9ML-toolkit.so -j 9ML-toolkit
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -s 9ML-toolkit.import.scm
  /root/salmonella-run-publish/chicken/bin/csi -n -R silex -e '(lex "NineML.l" "NineML.l.scm" (quote counters) (quote line))'
  /root/salmonella-run-publish/chicken/bin/csi -s NineML.grm
  /root/salmonella-run-publish/chicken/bin/csi -s expr.grm
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O -d2 -S -s parse.scm -o 9ML-parse.so -j 9ML-parse
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O -d2 -S -s repr.scm -o 9ML-repr.so -j 9ML-repr
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -s 9ML-repr.import.scm
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -s 9ML-parse.import.scm
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O -d2 -S -s ivp-octave.scm -o 9ML-ivp-octave.so -j 9ML-ivp-octave
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -s 9ML-ivp-octave.import.scm
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O -d2 -S -s ivp-chicken.scm -o 9ML-ivp-chicken.so -j 9ML-ivp-chicken
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -s 9ML-ivp-chicken.import.scm
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O -d2 -S -s ivp-mlton.scm -o 9ML-ivp-mlton.so -j 9ML-ivp-mlton
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -s 9ML-ivp-mlton.import.scm
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O -d2 -S -s ivp-octave-mlton.scm -o 9ML-ivp-octave-mlton.so -j 9ML-ivp-octave-mlton
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -s 9ML-ivp-octave-mlton.import.scm
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O -d2 -S report.scm -o 9ML-report
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O -d2 -S ivp.scm -o 9ML-ivp
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O -d2 -S shell.scm -o 9ML-shell
  /root/salmonella-run-publish/chicken/bin/csc -feature compiling-extension -setup-mode    -O -d2 -S ulp.scm -o 9ML-ulp

Warning: in local unknown procedure,
  in toplevel procedure `http-fetch':
  (ulp.scm:321) in procedure call to `close-input-port', expected argument #1 of type `input-port', but was given an argument of type `output-port'

Warning: in local unknown procedure,
  in toplevel procedure `http-fetch':
  (ulp.scm:331) in procedure call to `close-input-port', expected argument #1 of type `input-port', but was given an argument of type `output-port'
  cp -r 9ML-ivp-octave.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/9ML-ivp-octave.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/9ML-ivp-octave.so
  cp -r 9ML-ivp-octave.import.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/9ML-ivp-octave.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/9ML-ivp-octave.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/9ML-ivp-octave.setup-info
  cp -r 9ML-ivp-chicken.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/9ML-ivp-chicken.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/9ML-ivp-chicken.so
  cp -r 9ML-ivp-chicken.import.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/9ML-ivp-chicken.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/9ML-ivp-chicken.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/9ML-ivp-chicken.setup-info
  cp -r 9ML-ivp-mlton.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/9ML-ivp-mlton.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/9ML-ivp-mlton.so
  cp -r 9ML-ivp-mlton.import.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/9ML-ivp-mlton.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/9ML-ivp-mlton.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/9ML-ivp-mlton.setup-info
  cp -r 9ML-ivp-octave-mlton.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/9ML-ivp-octave-mlton.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/9ML-ivp-octave-mlton.so
  cp -r 9ML-ivp-octave-mlton.import.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/9ML-ivp-octave-mlton.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/9ML-ivp-octave-mlton.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/9ML-ivp-octave-mlton.setup-info
  cp -r 9ML-toolkit.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/9ML-toolkit.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/9ML-toolkit.so
  cp -r 9ML-toolkit.import.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/9ML-toolkit.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/9ML-toolkit.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/9ML-toolkit.setup-info
  cp -r 9ML-repr.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/9ML-repr.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/9ML-repr.so
  cp -r 9ML-repr.import.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/9ML-repr.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/9ML-repr.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/9ML-repr.setup-info
  cp -r 9ML-parse.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/9ML-parse.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/9ML-parse.so
  cp -r 9ML-parse.import.so /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/9ML-parse.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/9ML-parse.import.so
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/9ML-parse.setup-info
  cp -r 9ML-report /root/salmonella-run-publish/salmonella-repo/repo/bin/9ML-report
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/bin/9ML-report
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/9ML-report.setup-info
  cp -r 9ML-ivp /root/salmonella-run-publish/salmonella-repo/repo/bin/9ML-ivp
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/bin/9ML-ivp
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/9ML-ivp.setup-info
  cp -r 9ML-shell /root/salmonella-run-publish/salmonella-repo/repo/bin/9ML-shell
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/bin/9ML-shell
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/9ML-shell.setup-info
  cp -r 9ML-ulp /root/salmonella-run-publish/salmonella-repo/repo/bin/9ML-ulp
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/bin/9ML-ulp
  chmod a+r /root/salmonella-run-publish/salmonella-repo/repo/lib/chicken/6/9ML-ulp.setup-info
  mkdir -p /root/salmonella-run-publish/salmonella-repo/repo/share/chicken/9ML/examples
  chmod a+x /root/salmonella-run-publish/salmonella-repo/repo/share/chicken/9ML/examples
  cp -r examples/MorrisLecar81.9ML /root/salmonella-run-publish/salmonella-repo/repo/share/chicken/9ML/examples/MorrisLecar81.9ML
  cp -r examples/Izhikevich03.9ML /root/salmonella-run-publish/salmonella-repo/repo/share/chicken/9ML/examples/Izhikevich03.9ML
  cp -r examples/Destexhe94.9ML /root/salmonella-run-publish/salmonella-repo/repo/share/chicken/9ML/examples/Destexhe94.9ML
  cp -r examples/LeakyIAF.9ML /root/salmonella-run-publish/salmonella-repo/repo/share/chicken/9ML/examples/LeakyIAF.9ML
  cp -r examples/ExcInhNetwork.9ML /root/salmonella-run-publish/salmonella-repo/repo/share/chicken/9ML/examples/ExcInhNetwork.9ML